CRAN Package Check Results for Package PeakError

Last updated on 2021-06-21 10:52:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2017.06.19 2.41 26.35 28.76 OK
r-devel-linux-x86_64-debian-gcc 2017.06.19 1.91 20.79 22.70 OK
r-devel-linux-x86_64-fedora-clang 2017.06.19 45.20 OK
r-devel-linux-x86_64-fedora-gcc 2017.06.19 33.83 OK
r-devel-windows-x86_64 2017.06.19 5.00 39.00 44.00 ERROR
r-devel-windows-x86_64-gcc10-UCRT 2017.06.19 ERROR
r-patched-linux-x86_64 2017.06.19 2.43 25.55 27.98 OK
r-patched-solaris-x86 2017.06.19 52.00 OK
r-release-linux-x86_64 2017.06.19 2.29 25.39 27.68 OK
r-release-macos-arm64 2017.06.19 OK
r-release-macos-x86_64 2017.06.19 OK
r-release-windows-ix86+x86_64 2017.06.19 9.00 51.00 60.00 ERROR
r-oldrel-macos-x86_64 2017.06.19 OK

Check Details

Version: 2017.06.19
Check: tests
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpqQaDNq\fileb2447beb330b': No such file or directory
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 2017.06.19
Check: tests
Result: ERROR
     Running 'script.R'
    Running the tests in 'tests/script.R' failed.
    Last 13 lines of output:
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'C:\msys64\home\tomas\ucrt3\svn\ucrt3\r_packages\pkgcheck\CRAN\PeakError\tmp\RtmpUPIe6X\file30c41e326803': No such file or directory
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 2017.06.19
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpSgvrex\file18c0c193f35f4': No such file or directory
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2017.06.19
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'script.R' [1s]
     Running 'testthat.R' [2s]
    Running the tests in 'tests/script.R' failed.
    Complete output:
     > ## I initially tried writing these tests using testthat, but I got
     > ## errors when using the system() and system2() functions (bug in
     > ## testthat).
     > PeakError_compute.R <- system.file(
     + "exampleData", "PeakError_compute.R",
     + mustWork=TRUE,
     + package="PeakError")
     > Rscript <- R.home(file.path("bin", "Rscript"))
     > exampleData <- system.file("exampleData", package="PeakError", mustWork=TRUE)
     > peaks.bed <- file.path(exampleData, "peaks.bed")
     > labels.bed <- file.path(exampleData, "labels.bed")
     > overlapping.bed <- file.path(exampleData, "overlapping_peaks.bed")
     >
     > ##test_that("PeakError_compute.R correct", {
     > out.file <- tempfile()
     > cmd <- paste(Rscript, PeakError_compute.R, peaks.bed, labels.bed, ">", out.file)
     > status <- system(cmd)
     Error: Usage: compute_error.R peaks.bed labels.bed > errors.bed
     Execution halted
     > errors <- read.table(out.file, sep="\t", header=TRUE)
     Error in file(file, "rt") : cannot open the connection
     Calls: read.table -> file
     In addition: Warning message:
     In file(file, "rt") :
     cannot open file 'D:\temp\RtmpiIOyIY\file164c426056bb4': No such file or directory
     Execution halted
Flavor: r-release-windows-ix86+x86_64