CRAN Package Check Results for Package NetRep

Last updated on 2021-06-22 23:50:40 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.4 164.57 155.81 320.38 OK
r-devel-linux-x86_64-debian-gcc 1.2.4 110.93 116.93 227.86 OK
r-devel-linux-x86_64-fedora-clang 1.2.4 434.70 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.4 403.79 OK
r-devel-windows-x86_64 1.2.4 198.00 177.00 375.00 OK
r-devel-windows-x86_64-gcc10-UCRT 1.2.4 OK
r-patched-linux-x86_64 1.2.4 138.86 150.97 289.83 OK
r-patched-solaris-x86 1.2.4 297.40 ERROR
r-release-linux-x86_64 1.2.4 135.58 147.52 283.10 OK
r-release-macos-arm64 1.2.4 NOTE
r-release-macos-x86_64 1.2.4 NOTE
r-release-windows-ix86+x86_64 1.2.4 384.00 187.00 571.00 OK
r-oldrel-macos-x86_64 1.2.4 NOTE

Check Details

Version: 1.2.4
Check: installed package size
Result: NOTE
     installed size is 7.9Mb
     sub-directories of 1Mb or more:
     doc 1.4Mb
     libs 5.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.4
Check: examples
Result: ERROR
    Running examples in ‘NetRep-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: permutationTest
    > ### Title: Permutation test P-values for module preservation statistics
    > ### Aliases: permutationTest permutation permuted
    > ### Keywords: internal
    >
    > ### ** Examples
    >
    > data("NetRep")
    >
    > # Set up input lists for each input matrix type across datasets. The list
    > # elements can have any names, so long as they are consistent between the
    > # inputs.
    > network_list <- list(discovery=discovery_network, test=test_network)
    > data_list <- list(discovery=discovery_data, test=test_data)
    > correlation_list <- list(discovery=discovery_correlation, test=test_correlation)
    > labels_list <- list(discovery=module_labels)
    >
    > # Note that we recommend running at least 10,000 permutations to make sure
    > # that the null distributions are representative.
    >
    > preservation <- modulePreservation(
    + network=network_list, data=data_list, correlation=correlation_list,
    + moduleAssignments=labels_list, nPerm=1000, discovery="discovery",
    + test="test"
    + )
    [2021-05-24 14:33:36 BST] Validating user input...
    [2021-05-24 14:33:36 BST] Checking matrices for problems...
    [2021-05-24 14:33:36 BST] Input ok!
    [2021-05-24 14:33:36 BST] Calculating preservation of network subsets from
     dataset "discovery" in dataset "test".
    [2021-05-24 14:33:36 BST] Pre-computing network properties in dataset
     "discovery"...
    [2021-05-24 14:33:36 BST] Calculating observed test statistics...
    [2021-05-24 14:33:36 BST] Generating null distributions from 1000
     permutations using 15 threads...
    
    
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     *** caught segfault ***
    address 7716c97f, cause 'memory not mapped'
    
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Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [0m/180m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(NetRep)
     >
     > test_check("NetRep")
    
     *** caught segfault ***
     address be2422aa, cause 'memory not mapped'
Flavor: r-patched-solaris-x86

Version: 1.2.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NetRep.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address a7e6427c, cause 'memory not mapped'
Flavor: r-patched-solaris-x86