multinma 0.2.1
- Fix: Producing relative effect estimates for all contrasts using
relative_effects()
with all_contrasts = TRUE
no longer gives an error for regression models.
- Fix: Specifying the covariate correlation matrix
cor
in add_integration()
is not required when only one covariate is present.
- Improvement: Added more detailed documentation on the likelihoods and link functions available for each data type (
likelihood
and link
arguments in nma()
).
multinma 0.2.0
- Feature: The
set_*()
functions now accept dplyr::mutate()
style semantics, allowing inline variable transformations.
- Feature: Added ordered multinomial models, with helper function
multi()
for specifying the outcomes. Accompanied by a new data set hta_psoriasis
and vignette.
- Feature: Implicit flat priors can now be specified, on any parameter, using
flat()
.
- Improvement:
as.array.stan_nma()
is now much more efficient, meaning that many post-estimation functions are also now much more efficient.
- Improvement:
plot.nma_dic()
is now more efficient, particularly with large numbers of data points.
- Improvement: The layering of points when producing “dev-dev” plots using
plot.nma_dic()
with multiple data types has been reversed for improved clarity (now AgD over the top of IPD).
- Improvement: Aggregate-level predictions with
predict()
from ML-NMR / IPD regression models are now calculated in a much more memory-efficient manner.
- Improvement: Added an overview of examples given in the vignettes.
- Improvement: Network plots with
weight_edges = TRUE
no longer produce legends with non-integer values for the number of studies.
- Fix:
plot.nma_dic()
no longer gives an error when attempting to specify .width
argument when producing “dev-dev” plots.
multinma 0.1.3
- Format DESCRIPTION to CRAN requirements
multinma 0.1.2
- Wrapped long-running examples in
\donttest{}
instead of \dontrun{}
multinma 0.1.1
- Reduced size of vignettes
- Added methods paper reference to DESCRIPTION
- Added zenodo DOI
multinma 0.1.0
- Feature: Network plots, using a
plot()
method for nma_data
objects.
- Feature:
as.igraph()
, as_tbl_graph()
methods for nma_data
objects.
- Feature: Produce relative effect estimates with
relative_effects()
, posterior ranks with posterior_ranks()
, and posterior rank probabilities with posterior_rank_probs()
. These will be study-specific when a regression model is given.
- Feature: Produce predictions of absolute effects with a
predict()
method for stan_nma
objects.
- Feature: Plots of relative effects, ranks, predictions, and parameter estimates via
plot.nma_summary()
.
- Feature: Optional
sample_size
argument for set_agd_*()
that:
- Enables centering of predictors (
center = TRUE
) in nma()
when a regression model is given, replacing the agd_sample_size
argument of nma()
- Enables production of study-specific relative effects, rank probabilities, etc. for studies in the network when a regression model is given
- Allows nodes in network plots to be weighted by sample size
- Feature: Plots of residual deviance contributions for a model and “dev-dev” plots comparing residual deviance contributions between two models, using a
plot()
method for nma_dic
objects produced by dic()
.
- Feature: Complementary log-log (cloglog) link function
link = "cloglog"
for binomial likelihoods.
- Feature: Option to specify priors for heterogeneity on the standard deviation, variance, or precision, with argument
prior_het_type
.
- Feature: Added log-Normal prior distribution.
- Feature: Plots of prior distributions vs. posterior distributions with
plot_prior_posterior()
.
- Feature: Pairs plot method
pairs()
.
- Feature: Added vignettes with example analyses from the NICE TSDs and more.
- Fix: Random effects models with even moderate numbers of studies could be very slow. These now run much more quickly, using a sparse representation of the RE correlation matrix which is automatically enabled for sparsity above 90% (roughly equivalent to 10 or more studies).
multinma 0.0.1